
T79.250 Combinatorial Models and Stochastic Algorithms (4 cr)
Spring 2003
Stochastic methods such as MCMC sampling, simulated annealing
and genetic algorithms are currently at the forefront of approximate
techniques for dealing with computationally demanding problems.
This course presents these algorithms and their underlying theory,
with the goal of learning to apply the methods to novel problems
and achieving a broad understanding of their common foundations.
[Current]
[General]
[Lectures]
[Tutorials]
[Exams]
[Literature]
 A nicely typeset version of the
lecture notes (ps.gz) has kindly been made available by Vesa Hölttä.
The notes have not yet been proofread, but are surely already in this
form much preferable to the lecturer's handwritten scribbles. Be reminded
that you may also bring this text with you to the exam.
 New exam date: Wed 14 May 912.
 Bring a short description of your programming assignment
(what model do you intend to simulate/optimise & using which
method) with you to the lecture on Wed 9 April, or if you
cannot attend then, send the description by email to the
lecturer.
 No lecture on Fri 11 April due
to lecturer's business trip.
 Some really cool
applets
illustrating the ProppWilson algorithm from Jim Propp's home page.
 Master copy of lecture notes available in the rack
next to the Theory Lab office (TB336).
 Lectures:
Pekka Orponen
22 Jan  25 Apr, Wed 1416 room TA328, Fri 1214 room TB353.
 Tutorials:
Emil Falck, Fri 1012, room TB353.
 Examination:
Wed 14 May 912, T1.
 Grading: Tutorials, programming assignment and/or examination.
 Registration by
TOPI
or by attending the first two lectures
 Prerequisites: First two years' mathematics courses
including introductory probability theory (e.g. Mat2.090),
and programming skills (e.g. T106.230).
Familiarity with stochastic processes (Mat2.111), discrete
mathematics (Mat1.128), algorithm design (T106.410) and
computational complexity theory (T79.240) an asset.
 Grading: Exam 30 points, tutorial assignments 10 points,
programming assignment (to be handed out later) 20 points,
total 60 points.
 Course brochure (in Finnish):
ps/pdf
 Part I: Combinatorial Models
Spin glasses, NK landscapes, random formulas
Random graphs
Fitness landscapes
 Part II: Stochastic Algorithms
Markov chains and random walks
Monte Carlo simulation and MCMC sampling
MCMCbased approximation algorithms
Simulated annealing
Genetic algorithms
Other local search techniques: tabu search, recordtorecord travel
 Part III: Special Topics
Structure of fitness landscapes
Combinatorial phase transitions
Current issues
Lecture notes
A
typeset (ps.gz) version of the lecture notes from Spring 2003
has kindly been made available by Vesa Hölttä.
 General
E. Aarts, J. Lenstra (Eds.),
Local Search in Combinatorial Optimization.
John Wiley & Sons, New York, NY, 1997.
Y. BarYam, Dynamics of Complex Systems.
AddisonWesley, Reading MA, 1997.
(Available online at
http://www.necsi.org/publications/dcs/.)
M. Habib, C. McDiarmid, J. RamirezAlfonsin, B. Reed (Eds.),
Probabilistic Methods for Algorithmic Discrete Mathematics.
SpringerVerlag, Berlin, 1998.
D. L. Stein (Ed.), Lectures in the Sciences of Complexity.
AddisonWesley, Reading MA, 1989.
 Statistical mechanics, Ising model, spin glasses
R. Kindermann, J. L. Snell,
Markov Random Fields and Their Applications.
American Mathematical Society, Providence RI, 1980.
M. Mezard, G. Parisi, M. A. Virasoro (Eds.),
Spin Glass Theory and Beyond.
World Scientific, Singapore, 1987.
L. E. Reichl, A Modern Course in Statistical Physics, 2nd Ed..
J. Wiley & Sons, New York NY, 1998.
C. F. Stevens, The Six Core Theories of Modern Physics.
The MIT Press, Cambridge MA, 1995.
 Graph theory, random graphs, small world networks
B. Bollobás, Modern Graph Theory.
SpringerVerlag, New York NY, 1998.
B. Bollobás, Random Graphs, 2nd Ed.
Cambridge University Press, 2001.
R. Diestel, Graph Theory, 2nd Ed.
SpringerVerlag, New York NY, 2000.
(Available online at
http://www.math.unihamburg.de/home/diestel/books/graph.theory/.)
S. Janson, T. Luczak, A. Rucinski, Random Graphs.
J. Wiley & Sons, New York NY, 2000.
M. Karonski, "Random graphs." Handbook of Combinatorics,
Vol. 1 (R. L. Graham, M. Grötschel, L. Lovász, eds.), pp. 351380.
Elsevier, Amsterdam, 1995.
D. J. Watts, Small Worlds: The Dynamics of Networks Between Order
and Randomness. Princeton University Press, Princeton NJ, 1999.
 Markov chains, rapid mixing
E. Behrends, Introduction to Markov Chains,
with Special Emphasis on Rapid Mixing.
Vieweg & Sohn, Braunschweig/Wiesbaden, 2000.
P. Brémaud, Markov Chains: Gibbs Fields, Monte Carlo Simulation,
and Queues. SpringerVerlag, New York NY, 1999.
O. Häggström, Finite Markov Chains and Algorithmic Applications.
Cambridge University Press, 2002.
D. G. Luenberger, Introduction to Dynamic Systems: Theory,
Models, and Applications. J. Wiley & Sons, New York NY, 1979.
 MCMC approximation algorithms
M. Jerrum, A. Sinclair, "The Markov chain Monte Carlo method:
An approach to approximate counting and integration."
Approximation Algorithms for NPHard Problems
(D. Hochbaum, ed.), pp. 482520. PWS Publishing, Boston MA, 1997.
A. Sinclair, Algorithms for Random Generation & Counting:
A Markov Chain Approach. Birkhäuser, Boston MA, 1993.
 Simulated annealing, genetic algorithms
E. Aarts, J. Korst,
Simulated Annealing and Boltzmann Machines: A Stochastic Approach
to Combinatorial Optimization and Neural Computing.
J. Wiley & Sons, Chichester, 1989.
L. Kallel, B. Naudts, A. Rogers (Eds.),
Theoretical Aspects of Evolutionary Computing.
SpringerVerlag, Berlin, 2001.
C. R. Reeves, J. E. Rowe, Genetic Algorithms 
Principles and Perspectives. Kluwer Academic, Boston MA, 2003.
P. Salamon, P. Sibani, R. Frost,
Facts, Conjectures, and Improvements for Simulated Annealing.
Soc. Industrial & Applied Mathematics, Philadelphia PA, 2002.
M. D. Vose, The Simple Genetic Algorithm.
The MIT Press, Cambridge MA, 1999.
 Combinatorial phase transitions, fitness landscapes and related topics
[TCS main]
[Contact Info]
[Personnel]
[Research]
[Publications]
[Software]
[Studies]
[News Archive]
[Links]
Latest update: 23 December 2004.
Pekka Orponen.
